Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_0743DNA-binding response regulator; Identified by sequence similarity; putative InterPro: Response regulator receiver domain; Specificity unclear. (217 aa)    
Predicted Functional Partners:
ABO_0744
Conserved hypothetical protein.
 
 0.996
ABO_2032
(two-component, sensor histidine protein kinase, putative) identified by match to PFAM protein family HMMPF04093 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 0.981
regR
Response regulator; Identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity.
  
  
 
0.916
ABO_0741
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
       0.580
ABO_0742
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03561.
       0.580
ABO_0745
Conserved hypothetical protein.
       0.490
ABO_0746
Conserved hypothetical protein.
       0.484
ABO_2520
Sensor histidin kinase, contains PAS-fold, HisKA and HATPase_c domains; conserved hypothetical protein.
 
   
 0.475
hydG
Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.
  
     0.436
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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