Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_0765Transcriptional regulator, MerR family; Identified by match to PFAM protein family HMMPF00376. InterPro: Bacterial regulatory proteins MerR family; Family membership. (303 aa)    
Predicted Functional Partners:
phrB
DNA photolyase; Deoxyribodipyrimidine photolyase (DNA photolyase)(Photoreactivating enzyme). (deoxyribodipyrimidine photolyase) identified by sequencesimilarity; putative InterPro: DNA photolyase; High confidence in function and specificity.
 
  
 0.923
ABO_0764
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.881
ABO_0768
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.745
ABO_0767
Amine-oxidase, putative; (conserved hypothetical protein) identified by match to PFAM protein family HMMPF01593 Reaction: RCH(2)NH(2) + H(2)O + O(2) = Rcho + NH(3) + H(2)O(2) Cofaktor: FAD; High confidence in function and specificity.
     
 0.743
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to PFAM protein family HMMPF02353 InterPro: Cyclopropane-fatty-acyl-phospholipid synthase Reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid; High confidence in function and specificity.
       0.618
ABO_0763
Conserved hypothetical protein.
       0.500
yojI
Pyoverdine ABC export systempermease/ATP-binding protein identified by sequence similarity; putative InterPro: ABC transporter transmembrane region; Family membership.
  
     0.471
ABO_1307
Sensor histidine kinase/respose regulator, contains HisKA, HATPase_c and two Response_reg receiver domains; identified by sequencesimilarity; putative InterPro: Histidine kinase C-terminal; Family membership.
   
 
 0.457
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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