Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0778Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership. (257 aa)    
Predicted Functional Partners:
ABO_0777
Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.
       0.813
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.811
purC
(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.
       0.740
ABO_0775
Glycine cleavage system transcriptional repressor, putative; Identified by sequence similarity; putative InterPro: ACT domain; Function unclear.
       0.519
holC
DNA polymerase III, chi subunit; Identified by sequencesimilarity; putative; High confidence in function and specificity.
  
     0.511
ABO_0780
Hypothetical protein predicted by Glimmer/Critica.
       0.502
gltB
Glutamate synthase, large subunit; Identified by sequencesimilarity; putative identified by match to PFAM protein family HMMPF04897 and HMMPF01645 InterPro: Ferredoxin-dependent glutamate synthase; High confidence in function and specificity.
     
 0.494
ABO_0774
AhpC/TSA family protein identified by match to PFAM protein family HMMPF00578 InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership.
       0.459
algS
Sigma factor algU negative regulatory protein AlgS; Identified by match to PFAM protein family HMMPF03872 RseA_N; High confidence in function and specificity.
  
     0.430
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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