ABO_0780 protein (Alcanivorax borkumensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABO_0780

Hypothetical protein predicted by Glimmer/Critica. (77 aa)

Predicted Functional Partners:

purC

0.565

ABO_0777

0.508

ABO_0778

0.502

dapA

0.496

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABO_0777	ABO_0778	ABO_0777	ABO_0778	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	0.813
ABO_0777	ABO_0780	ABO_0777	ABO_0780	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	Hypothetical protein predicted by Glimmer/Critica.	0.508
ABO_0777	dapA	ABO_0777	ABO_0776	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.836
ABO_0777	purC	ABO_0777	ABO_0779	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	0.753
ABO_0778	ABO_0777	ABO_0778	ABO_0777	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	0.813
ABO_0778	ABO_0780	ABO_0778	ABO_0780	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	Hypothetical protein predicted by Glimmer/Critica.	0.502
ABO_0778	dapA	ABO_0778	ABO_0776	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.811
ABO_0778	purC	ABO_0778	ABO_0779	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	0.740
ABO_0780	ABO_0777	ABO_0780	ABO_0777	Hypothetical protein predicted by Glimmer/Critica.	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	0.508
ABO_0780	ABO_0778	ABO_0780	ABO_0778	Hypothetical protein predicted by Glimmer/Critica.	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	0.502
ABO_0780	dapA	ABO_0780	ABO_0776	Hypothetical protein predicted by Glimmer/Critica.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.496
ABO_0780	purC	ABO_0780	ABO_0779	Hypothetical protein predicted by Glimmer/Critica.	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	0.565
dapA	ABO_0777	ABO_0776	ABO_0777	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	0.836
dapA	ABO_0778	ABO_0776	ABO_0778	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	0.811
dapA	ABO_0780	ABO_0776	ABO_0780	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Hypothetical protein predicted by Glimmer/Critica.	0.496
dapA	purC	ABO_0776	ABO_0779	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	0.892
purC	ABO_0777	ABO_0779	ABO_0777	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	Conserved hypothetical protein; (lipoprotein putative) identified by sequencesimilarity; putative.	0.753
purC	ABO_0778	ABO_0779	ABO_0778	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	Metallo-beta-lactamase family protein; Identified by sequencesimilarity; putative InterPro: Metallo-beta-lactamase superfamily; Family membership.	0.740
purC	ABO_0780	ABO_0779	ABO_0780	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	Hypothetical protein predicted by Glimmer/Critica.	0.565
purC	dapA	ABO_0779	ABO_0776	(phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; putative InterPro: SAICAR synthetase; High confidence in function and specificity.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.892