Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_0812Identified by match to PFAM protein family HMMPF02515 InterPro: CAIB/BAIF family; Family membership; Belongs to the CoA-transferase III family. (402 aa)    
Predicted Functional Partners:
mvaB
hydroxymethylglutaryl-CoA lyase; Identified by sequence similarity; putative InterPro: HMG-CoA Lyase-like family; High confidence in function and specificity; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  0.755
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
      0.590
spoU
RNA methyltransferase, TrmH family, group 3; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.568
gcdH
glutaryl-CoA dehydrogenase; Identified by match to PFAM protein family HMMPF00441; High confidence in function and specificity.
 
 0.482
fadE-2
Acyl-CoA dehydrogenase, putative; Identified by sequencesimilarity InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity.
 
 
 0.427
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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