Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_0814Conserved hypothetical protein. (234 aa)    
Predicted Functional Partners:
ABO_0815
Trypsin-like serine protease; Serine endopeptidase identified by sequence similarity; putative InterPro: Serine proteases trypsin family; Specificity unclear; Belongs to the peptidase S1C family.
       0.571
spoU
RNA methyltransferase, TrmH family, group 3; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
    0.529
ABO_2616
Transcriptional regulator ArsR family identified by match to PFAM protein family HMMPF01022 InterPro: SAM (and some other nucleotide) binding motif; Family membership.
  
 
 0.525
ABO_2644
(hypothetical protein); identified by sequence similarity.
  
     0.443
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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