Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0817(alcohol dehydrogenase zinc-containing) identified by sequencesimilarity; putative; Family membership. (361 aa)    
Predicted Functional Partners:
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequencesimilarity; putative InterPro: Acyl transferase domain; High confidence in function and specificity.
 
    
 0.900
fabF
3-oxoacyl-[acyl-carrier-protein] synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.900
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
 
 0.785
ABO_2483
(alcohol dehydrogenase, zinc-containing) identified by match to TIGR protein family HMMTIGR01751; Pfam: ADH_zinc_N, Zinc-binding dehydrogenase; High confidence in function and specificity; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
  
     0.745
adhB
Alcohol dehydrogenase; Identified by sequencesimilarity; putative InterPro: Zinc-containing alcohol dehydrogenase superfamily; Family membership.
    
0.634
ABO_0818
Conserved hypothetical protein.
     
 0.558
fadB
long-chain-fatty-acid-CoA ligase, putative; Identified by match to TIGR protein family HMMTIGR01734; High confidence in function and specificity.
  
 
 0.538
ABO_0251
Deacetylase family protein identified by sequence similarity; putative InterPro: Histone deacetylase family; Family membership.
  
   0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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