Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprF(outer membrane protein OprF; OmpA domain protein) identified by sequence similarity; putative InterPro: Bacterial outer membrane protein; High confidence in function and specificity. (384 aa)    
Predicted Functional Partners:
ABO_0234
Flagellar motor protein; OmpA family protein identified by match to PFAM protein family HMMPF00691; Function unclear.
  
 
 0.664
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.599
wza
(polysaccharide export protein putative) identified by sequencesimilarity; putative InterPro: Polysaccharide export protein; Specificity unclear.
  
 0.547
ABO_1527
OmpA family protein; InterPro: Bacterial outer membrane protein; Family membership.
  
  
 
0.532
ompH
(outer membrane protein OmpH) identified by match to PFAM protein family HMMPF03938; Function unclear; Belongs to the skp family.
  
 
 0.516
lptD
Conserved hypothetical protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
      
 0.515
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
 0.479
ABO_1621
Outer membrane porin, putative; High confidence in function and specificity.
   
 0.476
ABO_2163
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.476
ABO_2195
Hypothetical protein; (multidrug efflux RND transporter putative) identified by match to TIGR protein family HMMTIGR00915.
 
 
 0.475
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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