STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0832Transcriptional regulator, AraC family; Identified by match to PFAM protein family HMMPF00165 InterPro: ThiJ/PfpI family; Specificity unclear. (330 aa)    
Predicted Functional Partners:
ABO_0833
acyl-CoA dehydrogenase family protein identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; Specificity unclear.
 
     0.613
mmsR
Transcriptional regulator (AraC family) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; High confidence in function and specificity.
 
 
0.498
ABO_1706
Transcriptional regulator, TetR family; Identified by sequencesimilarity; putative InterPro: Bacterial regulatory proteins TetR family HTH reporting nucleic acid binding motif; Family membership.
  
     0.492
colR
(DNA-binding heavy metal response regulator, putative) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Specificity unclear.
  
    0.490
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.408
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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