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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nrtBNitrate ABC transporter permease protein; Identified by sequencesimilarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership. (333 aa)    
Predicted Functional Partners:
nasD
Nitrate transporter ATPase component NasD; High confidence in function and specificity.
 0.998
nrtC
Nitrate transport ATP-binding protein; Function unclear.
 0.997
narB
(probable nitrate reductase large subunit) identified by sequencesimilarity; putative InterPro: Prokaryotic molybdopterin oxidoreductases; Family membership; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.976
nasS
Identified by sequence similarity; putative; Hypothetical protein.
 
 0.947
narI
narI. Respiratory nitrate reductase 1 gamma chain InterPro: Nitrate reductase gamma subunit; High confidence in function and specificity.
     
  0.900
narH
narH. Respiratory nitrate reductase 1 beta chain; High confidence in function and specificity.
     
  0.900
narG
(Respiratory nitrate reductase 1 alpha chain) identified by sequencesimilarity; putative; High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
ABO_1889
Sulfonate ABC transporter ATP-binding protein; Specificity unclear.
 
 0.824
ABO_1887
Sulfonate ABC transporter periplasmic-binding protein; Identified by sequence similarity; Specificity unclear.
 
 
 0.717
nasT
Nitrogen assimilation response regulatory protein; Identified by sequence similarity; putative InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
   
 0.646
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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