Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nasDNitrate transporter ATPase component NasD; High confidence in function and specificity. (279 aa)    
Predicted Functional Partners:
nrtC
Nitrate transport ATP-binding protein; Function unclear.
 0.998
nrtB
Nitrate ABC transporter permease protein; Identified by sequencesimilarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership.
 0.998
nasS
Identified by sequence similarity; putative; Hypothetical protein.
 
 0.992
narB
(probable nitrate reductase large subunit) identified by sequencesimilarity; putative InterPro: Prokaryotic molybdopterin oxidoreductases; Family membership; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.975
narI
narI. Respiratory nitrate reductase 1 gamma chain InterPro: Nitrate reductase gamma subunit; High confidence in function and specificity.
     
  0.900
narH
narH. Respiratory nitrate reductase 1 beta chain; High confidence in function and specificity.
     
  0.900
narG
(Respiratory nitrate reductase 1 alpha chain) identified by sequencesimilarity; putative; High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
ABO_1888
Sulfonate ABC transporter permease protein; Identified by sequence similarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Specificity unclear.
 
 
 0.859
modB
Molybdate ABC transporter permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.715
ABO_1887
Sulfonate ABC transporter periplasmic-binding protein; Identified by sequence similarity; Specificity unclear.
  
 
 0.680
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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