Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0854Conserved hypothetical protein. (394 aa)    
Predicted Functional Partners:
ABO_0491
Conserved hypothetical protein.
  
     0.701
nirB1
(nitrite reductase) identified by sequence similarity; putative InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity.
       0.637
nrtB
Nitrate ABC transporter permease protein; Identified by sequencesimilarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership.
 
     0.615
ABO_1930
Hypothetical protein; (transporter MgtC family) identified by sequencesimilarity; putative.
  
     0.613
ABO_0856
Hypothetical protein; Belongs to the cytochrome c-552 family.
       0.600
nasD
Nitrate transporter ATPase component NasD; High confidence in function and specificity.
 
     0.580
ABO_1676
Hypothetical protein.
  
     0.552
czcC1
Cobalt/zinc/cadmium efflux RND transporter outermembrane protein (CzcC family) identified by sequencesimilarity; putative InterPro: Outer membrane efflux protein; Family membership.
  
   
 0.527
nrtC
Nitrate transport ATP-binding protein; Function unclear.
 
     0.521
ABO_2003
Conserved hypothetical protein.
  
     0.509
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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