Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nasSIdentified by sequence similarity; putative; Hypothetical protein. (392 aa)    
Predicted Functional Partners:
nasD
Nitrate transporter ATPase component NasD; High confidence in function and specificity.
 
 0.992
ABO_1889
Sulfonate ABC transporter ATP-binding protein; Specificity unclear.
 
 
 0.950
nrtB
Nitrate ABC transporter permease protein; Identified by sequencesimilarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership.
 
 0.947
nasT
Nitrogen assimilation response regulatory protein; Identified by sequence similarity; putative InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
  
 0.920
narB
(probable nitrate reductase large subunit) identified by sequencesimilarity; putative InterPro: Prokaryotic molybdopterin oxidoreductases; Family membership; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.857
ABO_1401
Polyamine ABC transporter ATP-binding protein identified by match to TIGR protein family HMMTIGR01187 InterPro: AAA ATPase superfamily; Family membership.
 
      0.760
ABO_1088
(NAD(P)H-nitrite reductase family protein identified by sequence similarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Family membership.
 
  
 0.729
lolD
Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
 0.726
ABO_1888
Sulfonate ABC transporter permease protein; Identified by sequence similarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Specificity unclear.
 
 
 0.713
nirB1
(nitrite reductase) identified by sequence similarity; putative InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity.
 
  
 0.633
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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