STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0878(ATP-binding cassette (ABC) transporter, permease protein, putative) identified by match to PFAM protein family HMMPF00005 InterPro: AAA ATPase superfamily; Family membership. (314 aa)    
Predicted Functional Partners:
ABO_0879
(ABC transporter, permease protein, putative) identified by match to PFAM protein family HMMPF04306 InterPro: ABC 2 transport system integral membrane protein; Family membership.
  
 0.976
ABO_0298
(ATP-binding cassette (ABC) transporters, permease protein, putative) identified by match to PFAM protein family HMMPF04306 InterPro: ABC 2 transport system integral membrane protein; High confidence in function and specificity.
  
 0.865
ABO_1981
(amino acid ABC transporter, ATP-binding protein, putative) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; Specificity unclear.
 
    
0.849
livG
(branched-chain amino acid ABC transporter, ATP-binding protein) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; High confidence in function and specificity.
 
     
0.744
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.699
ABO_1847
(ABC transporter, ATP-binding protein, permease protein, putative) identified by match to TIGR protein family HMMTIGR01291; Family membership.
 
  
 0.690
gpmA
Phosphoglycerate mutase; Identified by sequence similarity; putative; Family membership.
       0.645
msbA
ATP-binding cassette (ABC) LPS transporter,permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 0.509
atpC
ATP synthase, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.412
atpD
ATP synthase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.