Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_0886Alcohol/choline dehydrogenase; Similar to: SP:Q00593 SP:P17444 and SP:P54223; identified by sequence similarity; identified by match to PFAM protein families HMMPF00732 and HMMPF05199; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Specificity unclear. (531 aa)    
Predicted Functional Partners:
ABO_0887
Hypothetical protein.
 
     0.621
ABO_0894
Conserved hypothetical protein.
   
  0.552
alkJ2
Alcohol dehydrogenase, GMC-oxidoreductase; FAD flavoprotein oxidoreductase; Choline dehydrogenase (CHD) (CDH); High confidence in function and specificity.
  
  
 
0.521
ABO_0637
Putative membrane protein; Hypothetical protein, TMHMM: reporting 6 transmembrane helices.
    
 0.507
ABO_2083
Conserved hypothetical protein that shows an Ankyrin-repeat InterPro: Ankyrin-repeat.
    
 0.438
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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