STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0894Conserved hypothetical protein. (336 aa)    
Predicted Functional Partners:
ABO_0895
Conserved hypothetical protein; InterPro: Glycosyl transferases group 1.
   
 
 0.838
ABO_0893
Conserved hypothetical protein.
  
  
 0.827
ABO_0896
Conserved hypothetical protein; Identified by sequence similarity; putative predicted membrane protein.
     
 0.824
ABO_0892
Conserved hypothetical protein.
     
 0.822
ABO_0889
(hypothetical protein) identified by match to PFAM protein family HMMPF04097.
     
 0.791
ABO_0891
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.789
ABO_0890
Conserved hypothetical protein.
       0.757
alarS
(alanyl-tRNA synthetase); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.728
alg8
Alginate biosynthesis protein Alg8; Function unclear.
  
 
 0.641
ABO_0888
Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: HNH nuclease.
       0.614
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.