Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0898Conserved hypothetical protein; (extracellular protein putative) identified by sequencesimilarity; putative. (1860 aa)    
Predicted Functional Partners:
ABO_0900
(pbpC) (penicillin-binding protein 1C) identified by sequencesimilarity; putative InterPro: Penicillin binding protein transpeptidase domain; High confidence in function and specificity.
 
   
 0.894
ABO_0897
Hypothetical protein predicted by Glimmer/Critica.
       0.773
ABO_1547
Conserved hypothetical protein.
  
    0.630
ABO_0890
Conserved hypothetical protein.
  
    0.576
ABO_1548
Conserved hypothetical protein.
  
    0.575
ABO_0894
Conserved hypothetical protein.
   
  0.539
ABO_1552
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58.
  
    0.526
ABO_0895
Conserved hypothetical protein; InterPro: Glycosyl transferases group 1.
  
    0.516
ABO_0892
Conserved hypothetical protein.
       0.515
ABO_0893
Conserved hypothetical protein.
       0.515
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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