STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0921Conserved hypothetical protein. (404 aa)    
Predicted Functional Partners:
ABO_0922
Conserved hypothetical protein.
     0.952
ABO_0923
Hypothetical protein.
 
     0.937
ABO_0920
Identified by match to PFAM protein family HMMPF00534 InterPro: Glycosyl transferases group 1; Family membership.
 
     0.917
ABO_0924
(glycosyl transferase probable) group 1 family protein identified by sequence similarity; putative InterPro: Glycosyl transferases group 1; Family membership.
 
     0.892
ABO_0919
Glycosyl transferase, putative; Identified by match to PFAM protein family HMMPF00534 InterPro: Glycosyl transferases group 1; High confidence in function and specificity.
 
     0.876
ABO_0927
(aminotransferase class I) identified by match to TIGR protein family HMMTIGR01265 InterPro: DegT/DnrJ/EryC1/StrS family The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. This enzyme is probably involved in the (regulation) of the cell wall biogenesis; High confidence in function and specificity.
 
  
 0.830
ABO_0918
(glycosyl transferase group 2 family protein) identified by match to TIGR protein family HMMTIGR01556 InterPro: Glycosyl transferase family 2; Family membership.
 
 
 0.827
ABO_0925
Sugar transferase, putative; Identified by match to PFAM protein family HMMPF02397 This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways; Family membership.
  
  
 0.812
ABO_0926
(lpxA) (acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase) identified by match to PFAM protein family HMMPF00132 catalytic activity: (r)-3-hydroxytetradecanoyl-[acyl-carrier protein] + udp-n-acetylglucosamine = [acyl-carrier protein] + udp-3-o-(3-hydroxytetradecanoyl)-n-acetylglucosamine; High confidence in function and specificity.
       0.773
galE
4-epimerase; Identified by match to TIGR protein family HMMTIGR01746; putative InterPro: Nucleoside-diphosphate dependent epimerase/dehydratase family; Specificity unclear.
 
  
 0.655
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.