ABO_0950 protein (Alcanivorax borkumensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABO_0950

Conserved hypothetical protein; Function unclear. (193 aa)

Predicted Functional Partners:

ligA1

0.812

ABO_0951

0.558

zipA

0.522

smc

0.457

ABO_2267

0.404

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABO_0950	ABO_0951	ABO_0950	ABO_0951	Conserved hypothetical protein; Function unclear.	Hypothetical protein; (oxidoreductase FMN-binding) identified by match to PFAM protein family HMMPF00724.	0.558
ABO_0950	ABO_2267	ABO_0950	ABO_2267	Conserved hypothetical protein; Function unclear.	Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04093.	0.404
ABO_0950	ligA1	ABO_0950	ABO_0949	Conserved hypothetical protein; Function unclear.	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	0.812
ABO_0950	smc	ABO_0950	ABO_0947	Conserved hypothetical protein; Function unclear.	Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.	0.457
ABO_0950	zipA	ABO_0950	ABO_0948	Conserved hypothetical protein; Function unclear.	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.	0.522
ABO_0951	ABO_0950	ABO_0951	ABO_0950	Hypothetical protein; (oxidoreductase FMN-binding) identified by match to PFAM protein family HMMPF00724.	Conserved hypothetical protein; Function unclear.	0.558
ABO_0951	ligA1	ABO_0951	ABO_0949	Hypothetical protein; (oxidoreductase FMN-binding) identified by match to PFAM protein family HMMPF00724.	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	0.570
ABO_2267	ABO_0950	ABO_2267	ABO_0950	Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04093.	Conserved hypothetical protein; Function unclear.	0.404
ligA1	ABO_0950	ABO_0949	ABO_0950	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	Conserved hypothetical protein; Function unclear.	0.812
ligA1	ABO_0951	ABO_0949	ABO_0951	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	Hypothetical protein; (oxidoreductase FMN-binding) identified by match to PFAM protein family HMMPF00724.	0.570
ligA1	smc	ABO_0949	ABO_0947	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.	0.499
ligA1	zipA	ABO_0949	ABO_0948	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.	0.522
smc	ABO_0950	ABO_0947	ABO_0950	Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.	Conserved hypothetical protein; Function unclear.	0.457
smc	ligA1	ABO_0947	ABO_0949	Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	0.499
smc	zipA	ABO_0947	ABO_0948	Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.	0.679
zipA	ABO_0950	ABO_0948	ABO_0950	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.	Conserved hypothetical protein; Function unclear.	0.522
zipA	ligA1	ABO_0948	ABO_0949	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.	DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.	0.522
zipA	smc	ABO_0948	ABO_0947	Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.	Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.	0.679