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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0959Oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership. (254 aa)    
Predicted Functional Partners:
ABO_0958
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
 
 0.829
ABO_2109
(short chain dehydrogenase/reductase, putative) identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.765
ABO_0960
Oxidoreductase (acting on the CH-OH group of donors with NAD+ or NADP+ as acceptor) identified by sequencesimilarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership.
 
    
0.739
ABO_0957
acyl-CoA dehydrogenase putative identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; Specificity unclear.
 
  0.639
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
 
 0.599
ABO_0956
Phosphoglycerate mutase, putative; (phosphoglycerate mutase family protein) identified by match to TIGR protein family HMMTIGR00249; putative InterPro: Phosphoglycerate mutase family; Family membership.
 
    0.592
ABO_2112
Dehydrogenase/reductase; Oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.582
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequencesimilarity; putative InterPro: Acyl transferase domain; High confidence in function and specificity.
 
 
 0.538
ABO_0833
acyl-CoA dehydrogenase family protein identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; Specificity unclear.
  
  0.460
ABO_2315
Oxidoreductase iron-sulfur-binding identified by match to PFAM protein family HMMPF00970; Family membership.
  
 0.435
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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