Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_0979Conserved hypothetical protein. (158 aa)    
Predicted Functional Partners:
phaD
phaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity.
  
     0.688
ABO_1762
Hypothetical protein; Identified by sequence similarity.
  
     0.609
ABO_0619
Conserved hypothetical protein; Identified by Glimmer2; high similarity to hypothetical protein pa4523 of Pseudomonas aeruginosa.
  
     0.605
ABO_0977
Conserved hypothetical protein.
       0.540
ABO_0978
Hypothetical protein predicted by Glimmer/Critica.
       0.540
ABO_1615
Hypothetical protein (conserved hypothetical protein) identified by sequencesimilarity; putative.
  
     0.460
ABO_2553
Hypothetical protein; (lip) (lipase) identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site.
  
     0.455
ABO_0251
Deacetylase family protein identified by sequence similarity; putative InterPro: Histone deacetylase family; Family membership.
    
 0.451
ABO_1389
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.442
ABO_0349
(Rieske 2Fe-2S family protein) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; Function unclear.
  
     0.434
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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