STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0990Oxidoreductase identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership. (289 aa)    
Predicted Functional Partners:
ABO_0985
Acid--thiol ligase (long-chain-fatty-acid-CoA ligase, putative) identified by sequencesimilarity; putative InterPro: AMP-dependent synthetase and ligase; Function unclear.
  
 0.920
accD
Acetyl-CoA carboxylase; Identified by sequencesimilarity; putative InterPro: Carboxyl transferase family; High confidence in function and specificity.
 
 
 0.854
ABO_0988
acyl-CoA dehydrogenase; Identified by sequencesimilarity; putative InterPro: Acyl-CoA dehydrogenase; Family membership.
 
  0.829
ABO_0991
Conserved hypothetical protein.
 
  
 0.800
acdS-2
Identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.655
ABO_2109
(short chain dehydrogenase/reductase, putative) identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.654
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
  
 
 0.595
ech2
(enoyl-CoA hydratase/isomerase FadB1x) identified by sequence similarity; putative InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity.
 
 
  0.587
ABO_0992
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
 
     0.462
fadB-2
(fatty oxidation complex alpha subunit, enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase) identified by sequence similarity; putative InterPro: enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership.
  
 0.428
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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