Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1000Conserved hypothetical protein. (468 aa)    
Predicted Functional Partners:
ABO_0999
Conserved hypothetical protein.
 
  
 0.984
ABO_1001
BNR domain protein; Identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat Uncharacterized protein related to plant photosystem II stability; Family membership.
 
  
 0.940
ABO_1002
Membrane protein, putative; Identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; conserved hypothetical protein.
 
  
 0.923
ABO_0666
Membrane protein, putative; Identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; Function unclear.
 
   
 0.743
ABO_0667
(BNR domain protein) identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat BNR repaets are short repeats that were found in glycosyl hydrolases as well as other extracellular proteins of unknown function; Function unclear.
 
  
 0.743
ABO_0997
Conserved hypothetical protein.
 
    0.641
ABO_1396
Hypothetical protein.
  
     0.542
ABO_1854
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.502
ABO_0520
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.474
ABO_1242
(membrane protein, putative) identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; Function unclear.
 
   
 0.474
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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