Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1010Hypothetical protein; InterPro: Cyclic nucleotide-binding domain. (216 aa)    
Predicted Functional Partners:
ABO_0537
InterPro: Cyclic nucleotide-binding domain; Function unclear.
  
  
  0.920
crp
Catabolite gene activator Crp; Identified by match to PFAM protein family HMMPF00325 InterPro: Cyclic nucleotide-binding domain; High confidence in function and specificity.
  
  
  0.920
anr-2
Transcriptional regulator Anr; Identified by sequencesimilarity; putative InterPro: Cyclic nucleotide-binding domain; Family membership.
     
  0.900
ABO_0885
Adenylate cyclase PA3217; Specificity unclear.
 
 
 0.728
ABO_0370
Conserved hypothetical protein.
  
     0.696
ABO_1229
Hypothetical protein predicted by Glimmer/Critica.
  
     0.656
ABO_0997
Conserved hypothetical protein.
  
    0.628
ABO_0435
Unnamed protein product; Specificity unclear; adenylate cyclase family protein identified by Glimmer2; putative InterPro: Guanylate cyclase.
 
 
 0.595
ABO_1227
Conserved hypothetical protein.
  
     0.591
ABO_2017
cAMP-dependent protein kinase regulatory chain; (cytochrome c551 peroxidase putative) identified by match to PFAM protein family HMMPF03150 InterPro: Cyclic nucleotide-binding domain; Family membership.
 
    0.587
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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