Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1014Conserved hypothetical protein. (263 aa)    
Predicted Functional Partners:
ABO_1015
Conserved hypothetical protein.
 
     0.946
ABO_1242
(membrane protein, putative) identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; Function unclear.
   
 0.881
ABO_0666
Membrane protein, putative; Identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; Function unclear.
   
 0.783
ABO_1535
(transport protein, putative) identified by sequencesimilarity; putative InterPro: HMGCR/Patched 5TM box; Family membership.
 
   
 0.676
ABO_0999
Conserved hypothetical protein.
 
    0.493
ABO_0520
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.474
ABO_1002
Membrane protein, putative; Identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; conserved hypothetical protein.
 
   
 0.452
ABO_1016
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Specificity unclear.
       0.444
macB
ABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
 
 0.432
ABO_1013
Hypothetical protein.
       0.417
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.