STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
erfKConserved hypothetical protein. (122 aa)    
Predicted Functional Partners:
ABO_2101
Conserved hypothetical protein; Identified by sequence similarity; putative.
      0.876
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
       0.811
hpt
Hypoxanthine phosphoribosyltransferase; Identified by sequence similarity; putative InterPro: Phosphoribosyl transferase; High confidence in function and specificity.
 
     0.801
deoD
Nucleoside phosphorylase, putative; (heat shock protein putative) identified by sequence similarity; putative InterPro: Purine and other phosphorylases family 2; High confidence in function and specificity.
 
     0.784
ABO_1019
Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: Uncharacterized protein family UPF0003.
     
 0.748
ABO_1271
Acetyltransferase (transferring groups other than amino-acyl groups) identified by match to PFAM protein family HMMPF00583 InterPro: GCN5-related N-acetyltransferase; Family membership.
      0.694
dacB
D-alanyl-D-alanine-carboxypeptidase; (D-alanyl-D-alanine carboxypeptidase) identified by match to PFAM protein family HMMPF02113 InterPro: D-Ala-D-Ala carboxypeptidase 3 (S13) family; High confidence in function and specificity.
     
 0.548
ABO_1016
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Specificity unclear.
       0.546
mrdA
Penicillin-binding protein 2, putative; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.542
ABO_1022
(metal ion transporter putative) identified by match to PFAM protein family HMMPF03471 InterPro: Domain of unknown function DUF21; Family membership.
       0.529
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.