STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1048Hypothetical protein. (262 aa)    
Predicted Functional Partners:
cheW
(chemotaxis protein, putative), pfam01584, CheW, CheW-like domain; conserved hypothetical protein.
  
     0.704
ABO_1047
Peptidyl-arginine deiminase family protein, putative; Identified by match to PFAM protein family HMMPF04371; putative; Family membership; Belongs to the agmatine deiminase family.
       0.703
ABO_1227
Conserved hypothetical protein.
  
     0.680
ABO_0370
Conserved hypothetical protein.
  
     0.672
algZ
(two-component system sensor protein, alginate biosynthesis) identified by Glimmer2; High confidence in function and specificity.
  
     0.635
ABO_1049
Lipoprotein releasing system, transmembrane protein, LolC/E family; Lipoprotein releasing system permease protein) identified by sequence similarity; putative transport lipids targeted to the outer membrane across the inner membrane; conserved hypothetical protein.
       0.600
chpA
ChpA two-component hybrid sensor and regulator, putative identified by match to TIGR protein family HMMTIGR01387 InterPro: Histidine kinase C-terminal still frameshift probable component of chemotactic signal transduction system; Specificity unclear.
  
     0.586
ABO_1046
Identified by sequence similarity; putative InterPro: Carbon-nitrogen hydrolase This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production; Family membership.
       0.583
lolD
Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.543
algR
(Alginate biosynthesis regulatory protein AlgR) identified by sequence similarity; putative InterPro: Response regulator receiver domain Pfam N-terminus: response_rec, Response regulator receiver domain Pfam C-terminus: LytTr; LytTr DNA-binding domain; High confidence in function and specificity.
  
     0.498
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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