STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rec2(DNA internalization-related competence protein ComEC/Rec2) identified by match to PFAM protein family HMMPF03772 InterPro: DNA internalization-related competence protein ComEC/Rec2 Possibly exported; Family membership. (742 aa)    
Predicted Functional Partners:
dprA
(peptide deformylase)(smf family protein; DNA processing protein, DprA, putative) identified by sequence similarity; putative InterPro: SMF family; Family membership.
 
  
 0.884
ABO_2221
Conserved hypothetical protein; (competence protein ComF putative) identified by sequence similarity; putative.
 
  
 0.852
pilD
Leaderpeptidase and N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.840
lpxK
Tetraacyldisaccharide 4`-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
 0.783
msbA
ATP-binding cassette (ABC) LPS transporter,permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
     
 0.777
ABO_1740
Identified by match to TIGR protein family HMMTIGR01259, TIGR00426; Family membership.
 
  
 0.743
exbB1
MotA/TolQ/ExbB proton channel family protein identified by match to PFAM protein family HMMPF01618; High confidence in function and specificity.
  
    0.730
exbD1
InterPro: Biopolymer transport protein ExbD/TolR; Specificity unclear.
       0.727
ftsK
Cell division protein FtsK; Identified by sequence similarity; putative InterPro: FtsK/SpoIIIE family This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli FTSK_ECOLI and the stage III sporulation protein E SpoIIIE; Family membership.
 
  
 0.707
radC
(DNA repair protein (family RadC)) identified by sequencesimilarity; putative InterPro: DNA repair protein radC family; High confidence in function and specificity; Belongs to the UPF0758 family.
 
  
 0.701
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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