STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptPt identified by match to PFAM protein family HMMPF01451 InterPro: Low molecular weight phosphotyrosine protein phosphatase; High confidence in function and specificity. (157 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
      0.938
wzb
Low molecular weight protein-tyrosine-phosphatase; Wzb (protein-tyrosine-phosphatase) identified by match to PFAM protein family HMMPF01451; High confidence in function and specificity; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
  0.900
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.838
msbA
ATP-binding cassette (ABC) LPS transporter,permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
 
 0.684
lpxK
Tetraacyldisaccharide 4`-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
    0.631
phrB
DNA photolyase; Deoxyribodipyrimidine photolyase (DNA photolyase)(Photoreactivating enzyme). (deoxyribodipyrimidine photolyase) identified by sequencesimilarity; putative InterPro: DNA photolyase; High confidence in function and specificity.
 
  
   0.615
exbD1
InterPro: Biopolymer transport protein ExbD/TolR; Specificity unclear.
     
 0.586
exbB1
MotA/TolQ/ExbB proton channel family protein identified by match to PFAM protein family HMMPF01618; High confidence in function and specificity.
       0.585
rec2
(DNA internalization-related competence protein ComEC/Rec2) identified by match to PFAM protein family HMMPF03772 InterPro: DNA internalization-related competence protein ComEC/Rec2 Possibly exported; Family membership.
       0.516
wzc
Putative tyrosine-protein kinase Wzc; Family membership; deleted EC_number 2.7.1.112.
  
 
 0.508
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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