STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_1062(hydrolase haloacid dehalogenase-like family) identified by sequencesimilarity; putative InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership. (229 aa)    
Predicted Functional Partners:
dhlA
Haloacid dehalogenase-like hydrolase, putative; Family membership.
  
  
  0.912
hprA
Glycerate dehydrogenase; Identified by sequencesimilarity; putative; High confidence in function and specificity; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.901
rluC
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
    0.884
ABO_1063
Peptidase S49 family identified by match to PFAM protein family HMMPF01343 InterPro: Signal peptide peptidase SppA 36K type; Function unclear.
  
    0.832
gph
Phosphoglycolate phosphatase; Identified by match to PFAM protein family HMMPF00702; putative InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership.
  
     0.402
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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