Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilZType IV pilus biogenesis protein, identified by sequence similarity to Pseudomonas syringae pv. tomato str. DC3000; High confidence in function and specificity. (115 aa)    
Predicted Functional Partners:
ABO_2443
Conserved hypothetical protein; Identified by sequencesimilarity.
  
 
 
 0.937
ABO_2433
Conserved hypothetical protein, signal transduction protein containing a membrane domain, an EAL and a GGDEF domain and PAS/PAC domain.
    
 
 0.909
pilM
Type IV fimbrial biogenesis protein PilM.
  
   
 0.859
pilQ
Fimbrial assembly protein pilQ precursor; InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein.
  
   
 0.842
pilO
Type 4 fimbrial biogenesis protein pilO.
  
   
 0.832
pilN-2
Type IV pili biogenesis protein PilN.
  
   
 0.824
pilP
Type 4 fimbrial biogenesis protein PilP.
  
   
 0.822
pilS
Two-component sensor histidine kinase; Identified by match to PFAM protein family HMMPF04306 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
  
  
 0.794
ABO_0132
LysM domain protein; Region start changed from 142733 to 142994 (-261 bases).
  
    0.783
ABO_1464
Conserved hypothetical protein; Identified by sequence similarity.
  
     0.765
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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