STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1081(aminotransferase, putative) identified by sequencesimilarity; putative InterPro: Aminotransferase class-V; Family membership. (377 aa)    
Predicted Functional Partners:
aapB
ATP-binding protein of ABC-transporter; ABC-type transport system involved in Fe-S cluster assembly, ATPase component; High confidence in function and specificity.
 
  
 0.836
ABO_2648
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03372 shows similarity to an endonuclease/Exonuclease/phosphatase family protein in P. syringae. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling.
  
 
   0.794
sufD
Permease component of ABC-tranporter; High confidence in function and specificity; conserved hypothetical protein, putative ABC transporter permease component, possibly involved in Fe-S cluster assembly.
 
 
 0.784
ABO_1865
ABC-type transport system involved in Fe-S cluster assembly, permease component; High confidence in function and specificity.
 
 
 0.773
ABO_1080
Conserved hypothetical protein.
       0.730
sufE
Fe-S metabolism associated domain protein; SufE protein probably involved in Fe-S center assembly; Family membership.
 
 
 0.679
ABO_1083
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.509
ABO_1082
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
       0.507
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
   
  
 0.436
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.