STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1083Conserved hypothetical protein; Identified by Glimmer2; putative. (184 aa)    
Predicted Functional Partners:
ABO_1082
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
 
     0.857
ABO_1081
(aminotransferase, putative) identified by sequencesimilarity; putative InterPro: Aminotransferase class-V; Family membership.
       0.509
ABO_1261
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03695; Belongs to the UPF0149 family.
  
     0.466
ABO_1417
Conserved hypothetical protein; Uncharacterized protein, possibly involved in aromatic compounds catabolism (translation initiation factor, probable) identified by match to TIGR protein family HMMTIGR00369.
  
     0.463
ABO_2527
N-terminal fragment of a phosphoenolpyruvate-protein phosphotransferase; identified by sequence similarity to Pfam family protein PF00391, PF01590, PF02896 Interpro: belongs to the pep-utilizing enzymes family: IPR00593, IPR006318/IPR000121; Family membership.
  
     0.462
ABO_1766
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0260 family.
  
     0.452
ABO_1080
Conserved hypothetical protein.
       0.441
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.