Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rsmJConserved hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. (247 aa)    
Predicted Functional Partners:
bacA
Bacitracin resistance protein BacA/undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
    0.880
ABO_1128
Conserved hypothetical protein; Identified by sequence similarity; putative InterPro: Glycoprotease (M22) metallo-protease family.
  
    0.670
ABO_1129
(conserved hypothetical protein TIGR00051) identified by match to PFAM protein family HMMPF03061 InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site.
  
    0.670
yoaA
Probable ATP-dependent helicase; (helicase putative) identified by match to TIGR protein family HMMTIGR01407; Specificity unclear.
       0.629
ABO_0520
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
    0.597
ABO_2137
Conserved hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.543
prlC
Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF01432 InterPro: Peptidase family M3; High confidence in function and specificity.
 
  
 0.524
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
  
 0.514
rnpA
Ribonuclease P, protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.493
ABO_0741
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
  
     0.473
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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