STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdsA(phosphatidate cytidylyltransferase, CDP-diglyceride synthetase) identified by match to PFAM protein family HMMPF01148 InterPro: Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); High confidence in function and specificity; Belongs to the CDS family. (274 aa)    
Predicted Functional Partners:
uppS
Undecaprenyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
 
  
 0.993
pgsA
(CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) identified by sequencesimilarity; putative InterPro: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; High confidence in function and specificity; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
 0.957
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
  
 0.944
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; Identified by sequence similarity; High confidence in function and specificity.
    
 0.934
pssA
CDP-diacylglycerol-serine O-phosphatidyltransferase; Identified by match to PFAM protein family HMMPF03653; High confidence in function and specificity; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.922
ABO_1150
Identified by match to PFAM protein family HMMPF02163 InterPro: Putative membrane-associated zinc metalloprotease; Function unclear.
  
  
 0.916
plsC1
1-acyl-sn-glycerol-3-phosphate acyltransferase; (plsC) identified by sequence similarity; putative InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); High confidence in function and specificity; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.909
ABO_1581
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01734.
     
  0.900
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamineN-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
   
 0.856
bamA
Outer membrane protein, bacterial surface antigen family protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
    0.817
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.