STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1173Hypothetical protein. (213 aa)    
Predicted Functional Partners:
ABO_1174
GMC oxidoreductase family protein; Identified by sequence similarity; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership.
       0.838
ABO_1172
Identified by match to TIGR protein family HMMTIGR01297 InterPro: Cation efflux family; Family membership; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.512
nlpD
Lipoprotein NlpD, putative; (lipoprotein NlpD) identified by sequence similarity; putative InterPro: Peptidase family M23/M37; Function unclear.
       0.457
ABO_1175
Alcohol dehydrogenase, iron-containing, putative; (alcohol dehydrogenase iron-containing) identified by match to PFAM protein family HMMPF00465 InterPro: Iron-containing alcohol dehydrogenase; High confidence in function and specificity.
       0.409
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.