STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1174GMC oxidoreductase family protein; Identified by sequence similarity; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership. (521 aa)    
Predicted Functional Partners:
ABO_1173
Hypothetical protein.
       0.869
ABO_1172
Identified by match to TIGR protein family HMMTIGR01297 InterPro: Cation efflux family; Family membership; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.512
aldH
Alcanivorax borkumensis aldehyde dehydrogenase,; Specificity unclear; Belongs to the aldehyde dehydrogenase family.
 
  
 0.497
ABO_0282
Monooxygenase flavin-binding family identified by sequence similarity; putative InterPro: Flavin-containing monooxygenase (FMO); Family membership.
  
  
 0.490
nlpD
Lipoprotein NlpD, putative; (lipoprotein NlpD) identified by sequence similarity; putative InterPro: Peptidase family M23/M37; Function unclear.
       0.443
ABO_1175
Alcohol dehydrogenase, iron-containing, putative; (alcohol dehydrogenase iron-containing) identified by match to PFAM protein family HMMPF00465 InterPro: Iron-containing alcohol dehydrogenase; High confidence in function and specificity.
  
  
 0.430
ABO_0637
Putative membrane protein; Hypothetical protein, TMHMM: reporting 6 transmembrane helices.
    
 0.422
ABO_2083
Conserved hypothetical protein that shows an Ankyrin-repeat InterPro: Ankyrin-repeat.
    
 0.422
ABO_0746
Conserved hypothetical protein.
    
  0.400
ABO_0894
Conserved hypothetical protein.
    
  0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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