Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_1185Identified by match to PFAM protein family HMMPF03675 InterPro: Cytochrome c class I; Family membership. (636 aa)    
Predicted Functional Partners:
petA
Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.909
petB
Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.831
ccoO-1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership.
  
 
 0.812
ccoN-1
Identified by match to TIGR protein family HMMTIGR00780 InterPro: Cytochrome c oxidase cbb3-type subunit I; High confidence in function and specificity; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.787
coxC
Cytochrome c oxidase, subunit III; Identified by match to PFAM protein family HMMPF04238 InterPro: Cytochrome c oxidase subunit III; High confidence in function and specificity.
  
 
 0.668
cyoC
Identified by sequence similarity; putative InterPro: Cytochrome c oxidase subunit III catalytic activity: ubiquinol-8 + o(2) = ubiquinone-8 + h(2)o; High confidence in function and specificity.
  
 
 0.668
copA-2
Copper-transporting P-type ATPase (EC 3.6.3.4); High confidence in function and specificity.
     
 0.651
petC
(ubiquinol--cytochrome c reductase cytochrome c1) identified by sequencesimilarity; putative InterPro: Cytochrome c1; High confidence in function and specificity.
  
 
 0.630
ABO_1347
Iron-sulfur cluster-binding protein; Identified by match to PFAM protein family HMMPF00037 InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain; High confidence in function and specificity.
  
  
 0.616
mnhAB
Multisubunit Na+/H+ antiporter; Probable Na(+)/H(+) antiporter subunit A/B, NADH/Ubiquinone/plastoquinone (complex I), NADH-Ubiquinone/plastoquinone (complex I), various chains,2a6301s01: monovalent cation:proton antiporter; High confidence in function and specificity.
   
 
 0.616
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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