ABO_1187 protein (Alcanivorax borkumensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABO_1187

Conserved hypothetical protein; Identified by Glimmer2. (172 aa)

Predicted Functional Partners:

cysI

0.980

cysH

0.795

cysI-1

0.525

cysI-2

0.525

ABO_1189

0.518

cysG

0.445

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABO_1187	ABO_1189	ABO_1187	ABO_1189	Conserved hypothetical protein; Identified by Glimmer2.	Hypothetical protein.	0.518
ABO_1187	cysG	ABO_1187	ABO_1295	Conserved hypothetical protein; Identified by Glimmer2.	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	0.445
ABO_1187	cysH	ABO_1187	ABO_1686	Conserved hypothetical protein; Identified by Glimmer2.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	0.795
ABO_1187	cysI	ABO_1187	ABO_1188	Conserved hypothetical protein; Identified by Glimmer2.	Sulfite reductase (NADPH); (sulphite reductase hemoprotein beta subunit) identified by sequence similarity;putative InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.980
ABO_1187	cysI-1	ABO_1187	ABO_2125	Conserved hypothetical protein; Identified by Glimmer2.	Sulfite reductase (NADPH); Identified by similarity to Pfam protein families PF01077 and PF03460 InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.525
ABO_1187	cysI-2	ABO_1187	ABO_2126	Conserved hypothetical protein; Identified by Glimmer2.	Sulfite reductase (NADPH); (cysI-2); identified by similarity to Pfam protein families PF01077 and PF03460; High confidence in function and specificity.	0.525
ABO_1189	ABO_1187	ABO_1189	ABO_1187	Hypothetical protein.	Conserved hypothetical protein; Identified by Glimmer2.	0.518
ABO_1189	cysI	ABO_1189	ABO_1188	Hypothetical protein.	Sulfite reductase (NADPH); (sulphite reductase hemoprotein beta subunit) identified by sequence similarity;putative InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.513
cysG	ABO_1187	ABO_1295	ABO_1187	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Conserved hypothetical protein; Identified by Glimmer2.	0.445
cysG	cysH	ABO_1295	ABO_1686	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	0.978
cysG	cysI	ABO_1295	ABO_1188	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Sulfite reductase (NADPH); (sulphite reductase hemoprotein beta subunit) identified by sequence similarity;putative InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.932
cysG	cysI-1	ABO_1295	ABO_2125	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Sulfite reductase (NADPH); Identified by similarity to Pfam protein families PF01077 and PF03460 InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.897
cysG	cysI-2	ABO_1295	ABO_2126	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Sulfite reductase (NADPH); (cysI-2); identified by similarity to Pfam protein families PF01077 and PF03460; High confidence in function and specificity.	0.893
cysH	ABO_1187	ABO_1686	ABO_1187	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	Conserved hypothetical protein; Identified by Glimmer2.	0.795
cysH	cysG	ABO_1686	ABO_1295	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	0.978
cysH	cysI	ABO_1686	ABO_1188	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	Sulfite reductase (NADPH); (sulphite reductase hemoprotein beta subunit) identified by sequence similarity;putative InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.990
cysH	cysI-1	ABO_1686	ABO_2125	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	Sulfite reductase (NADPH); Identified by similarity to Pfam protein families PF01077 and PF03460 InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	0.984
cysH	cysI-2	ABO_1686	ABO_2126	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	Sulfite reductase (NADPH); (cysI-2); identified by similarity to Pfam protein families PF01077 and PF03460; High confidence in function and specificity.	0.838
cysI	ABO_1187	ABO_1188	ABO_1187	Sulfite reductase (NADPH); (sulphite reductase hemoprotein beta subunit) identified by sequence similarity;putative InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	Conserved hypothetical protein; Identified by Glimmer2.	0.980
cysI	ABO_1189	ABO_1188	ABO_1189	Sulfite reductase (NADPH); (sulphite reductase hemoprotein beta subunit) identified by sequence similarity;putative InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.	Hypothetical protein.	0.513