Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_1197Carboxylic ester hydrolases identified by sequencesimilarity; putative InterPro: Alpha/beta hydrolase fold; Family membership. (318 aa)    
Predicted Functional Partners:
estC
InterPro: Carboxylesterases type-B; High confidence in function and specificity.
  
  
 0.576
ABO_1198
Membrane protein putative identified by match to PFAM protein family HMMPF00892 InterPro: Integral membrane protein DUF6; Function unclear.
       0.559
estB
(lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxylesterase family active site; High confidence in function and specificity.
      
 0.482
ABO_2108
(lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxlesterase family active site; High confidence in function and specificity.
      
 0.482
ABO_2454
(lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxlesterase family active site; High confidence in function and specificity.
      
 0.482
ABO_2449
Hydrolase, alpha/beta fold family; Identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
  
   
 0.461
pdxB
Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
     
 0.460
ABO_0436
Hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
  
     0.459
hrpA
ATP-dependent helicase HrpA; Identified by sequence similarity; putative InterPro: DEAD/DEAH box helicase; Family membership.
      
 0.459
lon-1
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
    
  0.451
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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