ABO_1200 protein (Alcanivorax borkumensis) - STRING interaction network

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ABO_1200

(conserved hypothetical protein TIGR00481) identified by sequence similarity. (210 aa)

Predicted Functional Partners:

rnc

0.792

rpsE

0.778

rplB

0.777

rplS

0.776

rpsB

0.773

rpmF

0.771

rpmA

0.770

rpsJ

0.768

rplO

0.767

rplQ

0.766

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABO_1200	rnc	ABO_1200	ABO_1631	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.792
ABO_1200	rplB	ABO_1200	ABO_0400	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.777
ABO_1200	rplO	ABO_1200	ABO_0416	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.767
ABO_1200	rplQ	ABO_1200	ABO_0423	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	50S ribosomal protein L17; Identified by match to PFAM protein family HMMPF01196 InterPro: Ribosomal protein L17; High confidence in function and specificity.	0.766
ABO_1200	rplS	ABO_1200	ABO_0801	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.776
ABO_1200	rpmA	ABO_1200	ABO_0453	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	50S ribosomal protein L27; Identified by sequencesimilarity; putative InterPro: Ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family.	0.770
ABO_1200	rpmF	ABO_1200	ABO_1066	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	50S ribosomal protein L32; Identified by sequencesimilarity; putative; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL32 family.	0.771
ABO_1200	rpsB	ABO_1200	ABO_1143	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	30S ribosomal protein S2; Identified by sequencesimilarity; putative InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	0.773
ABO_1200	rpsE	ABO_1200	ABO_0414	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.778
ABO_1200	rpsJ	ABO_1200	ABO_0396	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.768
rnc	ABO_1200	ABO_1631	ABO_1200	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	(conserved hypothetical protein TIGR00481) identified by sequence similarity.	0.792
rnc	rplB	ABO_1631	ABO_0400	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.816
rnc	rplO	ABO_1631	ABO_0416	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.832
rnc	rplQ	ABO_1631	ABO_0423	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L17; Identified by match to PFAM protein family HMMPF01196 InterPro: Ribosomal protein L17; High confidence in function and specificity.	0.843
rnc	rplS	ABO_1631	ABO_0801	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.841
rnc	rpmA	ABO_1631	ABO_0453	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L27; Identified by sequencesimilarity; putative InterPro: Ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family.	0.831
rnc	rpmF	ABO_1631	ABO_1066	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L32; Identified by sequencesimilarity; putative; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL32 family.	0.841
rnc	rpsB	ABO_1631	ABO_1143	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S2; Identified by sequencesimilarity; putative InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	0.832
rnc	rpsE	ABO_1631	ABO_0414	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.789
rnc	rpsJ	ABO_1631	ABO_0396	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.804