STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1221Membrane-bound lytic murein transglycosylase D; Identified by match to PFAM protein family HMMPF01464 InterPro: SLT domain; High confidence in function and specificity. (539 aa)    
Predicted Functional Partners:
ABO_1220
(oligopeptide ABC transporter periplasmic peptide-binding protein putative) identified by sequence similarity and by match to PFAM protein family HMMPF00496; putative InterPro: Bacterial extracellular solute-binding protein family 5; Function unclear.
     
 0.801
oppB
(oligopeptide ABC transporter, permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF00528; putative InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.
       0.786
ABO_1219
(oligopeptide ABC transporter periplasmic peptide-binding protein putative) identified by sequence similarity and by match to PFAM protein family HMMPF00496; putative InterPro: Bacterial extracellular solute-binding protein family 5; Function unclear.
     
 0.786
oppC
(oligopeptide ABC transporter, permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF00528; putative InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.
       0.784
oppF
(oligopeptide ABC transporter, ATP-binding protein) identified ba sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; High confidence in function and specificity.
       0.783
ABO_0365
Peptidase M23/M37 family identified by match to PFAM protein family HMMPF04225; Family membership.
 
  
 0.647
ABO_1525
Periplasmic binding domain/transglycosylase SLTdomain fusion protein; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- bind [...]
 
   
 0.645
ABO_1223
Conserved hypothetical protein identified by sequencesimilarity; putative.
 
   
 0.642
bla
Metallo-beta-lactamase family protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
       0.632
mltF
Periplasmic binding domain/transglycosylase SLTdomain fusion; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding prot [...]
 
   
 0.621
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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