STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1242(membrane protein, putative) identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; Function unclear. (773 aa)    
Predicted Functional Partners:
ABO_1014
Conserved hypothetical protein.
   
 0.881
ABO_1015
Conserved hypothetical protein.
 
     0.795
ivd
isovaleryl-CoA dehydrogenase; Identified by sequencesimilarity; putative InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity.
       0.544
ABO_1241
Transcriptional regulator, putative InterPro: Bacterial regulatory proteins MerR family; Hypothetical protein.
       0.544
ABO_0999
Conserved hypothetical protein.
 
    0.495
ABO_1243
Sensor histidine kinase containing HisKA, HATPase_c and Response_reg domains, identified by match to PFAM protein family HMMPF04171 InterPro: Histidine kinase C-terminal; conserved hypothetical protein.
       0.490
ABO_1244
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01118.
       0.490
ABO_1000
Conserved hypothetical protein.
 
   
 0.474
ABO_1239
(Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), putative) identified by sequencesimilarity; putative InterPro: Carboxyl transferase family; High confidence in function and specificity.
       0.418
ABO_1001
BNR domain protein; Identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat Uncharacterized protein related to plant photosystem II stability; Family membership.
 
  
 0.410
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.