STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1260Conserved hypothetical protein. (194 aa)    
Predicted Functional Partners:
ABO_1259
Cholesterol oxidase, putative; Identified by sequence similarity; putative InterPro: Cholesterol oxidase (CHOD); Function unclear.
       0.682
ABO_0619
Conserved hypothetical protein; Identified by Glimmer2; high similarity to hypothetical protein pa4523 of Pseudomonas aeruginosa.
  
     0.672
ABO_2602
Hypothetical protein.
  
     0.538
ABO_1550
Conserved hypothetical protein.
 
     0.521
ABO_1227
Conserved hypothetical protein.
  
    0.453
ABO_1549
Conserved hypothetical protein.
  
     0.449
ABO_1395
(conserved hypothetical protein; SH3 domain protein) identified by sequencesimilarity.
  
     0.431
ABO_1547
Conserved hypothetical protein.
 
    0.430
ABO_1258
Hypothetical protein.
       0.427
ABO_2503
Oxidoreductase, ado/keto reductase family; Identified by match to PFAM protein family HMMPF00248 InterPro: Aldo/keto reductase family; Family membership.
  
     0.427
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.