Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_1265Oxidoreductase (acting on the CH-OH group of donors) InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (265 aa)    
Predicted Functional Partners:
ydaO
Conserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
       0.781
ABO_0632
(oxidoreductase short chaindehydrogenase/reductase family) identified by sequencesimilarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Specificity unclear.
  
 
   0.697
ABO_0247
Hypothetical protein.
 
  
   0.632
ABO_2053
Dehydrogenase/reductase; Dehydrogenases with different specificities identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity.
  
 
   0.559
tag
DNA-3-methyladenine glycosidase I; Identified by sequencesimilarity; putative InterPro: DNA-3-methyladenine glycosylase I; High confidence in function and specificity.
 
      0.551
ABO_1264
acyl-CoA dehydrogenase; (acdA) identified by sequencesimilarity; putative InterPro: Acyl-CoA dehydrogenase; Specificity unclear.
       0.510
ABO_1263
Oxidoreductase (acting on the CH-CH group) identified by sequencesimilarity; putative InterPro: Acyl-CoA dehydrogenase; Family membership.
       0.503
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
       0.429
ABO_0656
3-hydroxyacyl-CoA dehydrogenase identified by sequencesimilarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.407
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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