STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_1300Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04178 InterPro: Uncharacterized protein family UPF0005; Belongs to the BI1 family. (227 aa)    
Predicted Functional Partners:
ABO_1299
DsrE/DsrF-like family protein; DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction, identified by sequences imilarity InterPro: DsrE-like protein; Family membership.
       0.838
ABO_1297
Hypothetical protein.
       0.663
ABO_1298
Hypothetical protein.
       0.663
ABO_1296
Glycosyl transferase, putative; Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF02885; putative InterPro: Glycosyl transferase family; Family membership.
       0.563
ABO_0534
Conserved hypothetical protein.
  
     0.488
ABO_1223
Conserved hypothetical protein identified by sequencesimilarity; putative.
  
    0.471
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
   0.465
hflK
Protease subunit HflK; HflC and HflK could encode or regulate a protease.
      
 0.443
htpX
Heat shock protein HtpX; Identified by match to PFAM protein family HMMPF04066 InterPro: Peptidase family M48; Family membership; Belongs to the peptidase M48B family.
  
  
 0.434
ABO_1909
(protease, putative) identified by match to PFAM protein family HMMPF04066 InterPro: Peptidase family M48; Family membership.
  
  
 0.434
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.