STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1309Sensory box protein/response regulator; Identified by sequencesimilarity; putative InterPro: Response regulator receiver domain; High confidence in function and specificity. (158 aa)    
Predicted Functional Partners:
ABO_1598
Sensor histidine kinase identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Function unclear.
 
 0.975
ABO_0972
Phosphotransferase-histidinkinase, family protein; Phosphotransferases (with a nitrogenous group as acceptor) identified by match to PFAM protein family HMMPF04171 InterPro: Histidine kinase C-terminal; Family membership.
 
 0.972
gacS
Sensor/response regulator hybrid; (sensor histidine kinase/response regulator GacS) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
0.961
ABO_2520
Sensor histidin kinase, contains PAS-fold, HisKA and HATPase_c domains; conserved hypothetical protein.
 
 
 0.952
ABO_2433
Conserved hypothetical protein, signal transduction protein containing a membrane domain, an EAL and a GGDEF domain and PAS/PAC domain.
 
 
 0.948
phoR
Phosphate regulon sensor protein PhoR; (sensory box histidine kinase PhoR) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 
 
 0.947
cheR-2
(chemotaxis protein methyltransferase CheR-like) identified by sequence similarity; putative InterPro: CheR-type MCP methyl-transferase; High confidence in function and specificity.
 
   
 0.946
ABO_0442
Sensor histidine kinase identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Function unclear.
 
0.938
ABO_1243
Sensor histidine kinase containing HisKA, HATPase_c and Response_reg domains, identified by match to PFAM protein family HMMPF04171 InterPro: Histidine kinase C-terminal; conserved hypothetical protein.
 
0.938
ABO_1853
(sensor histidine kinase/response regulator, putative) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership.
 
0.938
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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