STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspEGeneral secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (500 aa)    
Predicted Functional Partners:
gspF
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP F family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein; Family membership.
 
 0.988
gspG
Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane.Belongs to the GSP G family; Family membership.
 
 
 0.967
tapC
Type IV pilus assembly protein TapC; Identified by sequence similarity; Family membership.
 
 0.933
ABO_2303
(type II secretion system protein, putative) identified by sequence similarity and match to PFAM protein family HMMPF00437 Type II traffic warden ATPase; Pectic enzymes secretion protein outE InterPro: Bacterial type II secretion system protein E; Family membership.
  
  
 
0.912
gspI
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP I family,identified by sequence similarity InterPro: Bacterial type II secretion system protein I/J; Family membership.
 
 
 0.906
gspJ
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP J family,identified by sequence similarity; Family membership.
 
   
 0.894
gspH
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP H family, by sequence similarity; Family membership.
  
 
 0.881
ABO_1311
Sensory box protein/response regulator identified by sequencesimilarity; putative; Function unclear.
   
 
 0.870
pilD
Leaderpeptidase and N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.861
cheB-2
Protein-glutamate methylesterase; Identified by sequencesimilarity; putative InterPro: CheB methylesterase; High confidence in function and specificity.
       0.858
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.