STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1330ABC1/ AarF family protein; Region start changed from 1511994 to 1511937 (-57 bases). (456 aa)    
Predicted Functional Partners:
ABO_1331
Hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
       0.525
pntA
Pyridine nucleotide transhydrogenase A subunit; (transcriptional regulator LysR family) identified by match to PFAM protein family HMMPF03466 InterPro: Alanine dehydrogenase and pyridine nucleotide transhydrogenase; High confidence in function and specificity.
     
 0.478
coq7
Conserved hypothetical protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 0.473
ABO_1328
Oxidoreductase; Ocidoredutase (acting on NADH or NADPH with NAD+ or NADP+ as acceptor); Family membership.
     
 0.472
pntB
Pyridine nucleotide transhydrogenase, B subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.464
atfA1
Acyltransferase, homologous to ABO_1804, AtfA2 and to the ACIAD0832, wax ester synthase/ diacylglycerol acyltransferase of Acinetobacter sp. AP1; High confidence in function and specificity.
  
     0.439
ABO_0977
Conserved hypothetical protein.
  
     0.428
ABO_2599
Oxygenase; Family membership.
  
 0.420
ABO_2553
Hypothetical protein; (lip) (lipase) identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site.
  
 
   0.408
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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