ABO_1332 protein (Alcanivorax borkumensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABO_1332

(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family. (747 aa)

Predicted Functional Partners:

ABO_0521

0.766

ABO_1333

0.565

ABO_2041

0.546

ABO_1575

0.421

ABO_2516

0.418

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ABO_0521	ABO_1332	TPR domain protein; Identified by match to PFAM protein family HMMPF00515; Specificity unclear.	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	0.766
ABO_1332	ABO_0521	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	TPR domain protein; Identified by match to PFAM protein family HMMPF00515; Specificity unclear.	0.766
ABO_1332	ABO_1333	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	Membrane protein, putative.	0.565
ABO_1332	ABO_1575	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	Conserved hypothetical protein.	0.421
ABO_1332	ABO_2041	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	Identified by match to PFAM protein family HMMPF00877 InterPro: NLP/P60; Function unclear.	0.546
ABO_1332	ABO_2516	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	Hypothetical protein; (cadA-1) (cadmium translocating P-type ATPase) identified by sequence similarity; putative.	0.418
ABO_1333	ABO_1332	Membrane protein, putative.	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	0.565
ABO_1575	ABO_1332	Conserved hypothetical protein.	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	0.421
ABO_2041	ABO_1332	Identified by match to PFAM protein family HMMPF00877 InterPro: NLP/P60; Function unclear.	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	0.546
ABO_2516	ABO_1332	Hypothetical protein; (cadA-1) (cadmium translocating P-type ATPase) identified by sequence similarity; putative.	(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.	0.418

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About